Synethic biology coverAdventures in Synthetic Biology. Story by Drew Endy and Isadora Deese and the MIT Synthetic Biology Working Group. Art by Chuck Wadey. Originally published in 2005. Available for free, PDF

Reviewed by Carl Zimmer

In the early 1970s, three scientists ran a simple experiment. They cut genes out of the DNA of a frog and inserted them into E. coli. The frog genes functioned in their new home. The microbe was able to make RNA from them, the first step in translating the information in genes into proteins. And when the microbe divided in two, it made new copies of the frog genes along with its own. It was, to some extent, a microbe-frog hybrid.

The experiment was simple only in its concept, though. It had taken the scientists–Herbert Boyer, Stanley Cohen, and John Morrow–years of research to find the tools to do the job, such as enzymes that bacteria use slice up the DNA of invading viruses. And because it had been the first time that anyone had achieved such a feat, it shook the world.

On the one hand, many scientists and pharmaceutical companies saw a huge potential future for gene pasting. Imagine E. coli carrying the gene for human insulin, for example. Instead of harvesting insulin from cow pancreases, it would be possible to brew insulin the same way people brew beer. One company that sprang up in the wake of the frog-microbe experiment, Cetus, promised that by 2000, virtually all diseases would be cured with proteins made through the genetic engineering that Boyer and his colleagues had invented. 

On the other hand, critics saw the apocalypse. Some feared that insulin-pumping E. coli would run amok and spread an epidemic of diabetic comas. If the world embraced genetic engineering, the eminent biologist Erwin Chargaff warned, "the future will curse us."

Forty years after Boyer and his colleagues created their frog-microbe hybrid, the extreme predictions at either end of the prophecy spectrum have failed to come true. No diabetic coma epidemic. (E. coli burdened with human insulin genes can't compete with their lean, wild relatives.) Instead, millions of diabetics get a reliable supply of insulin from the microbes. On the other hand, just having a microbial factory doesn't automatically mean you can cure all diseases. Or even many of them. (I write more about how E. coli launched the biotech industry in my book Microcosm.)

Now, however, genetic engineering is morphing into something new. In the late 1990s, a group of engineers and biologists came together to try to manipulate cells the way they might manipulate the circuits in computer. The analogy between computers and cells is far from perfect, because our bodies are the product of evolution rather than a computer factory. Nevertheless, we have genes that switch other genes on and off, and some genes require inputs from several other genes before they make their own proteins. Cells use this genetic circuitry to detect signals, to process information, and to make decisions. The engineers and biologists set out to rewire that circuitry, inserting many different genes in combinations that would produce new behaviors. They called their project synthetic biology.

Continue reading “A Comic Book Guide to Rewiring Life”


Mcafee2John McAfee’s Last Stand
by Joshua Davis.
Published by Conde Nast. Kindle, $0.99, or as part of Wired’s Nook ($4.99) and iPad ($3.99) editions of the Jan 2013 issue.

Reviewed by Veronique Greenwood

When the Belizean government announced on November 12 of last year that they were seeking John McAfee for questioning about the murder of his neighbor on the white-sand island of Ambergris Caye, it was just the latest, grimmest installment in one of the strangest tech stories of 2012. The former anti-virus tycoon’s Central American escapades had become news six months prior, when his jungle compound had been raided by the government on suspicions that he was manufacturing meth.

No drugs were found, but after the raid, Joshua Davis, a Wired contributing editor, began investigating McAfee’s doings, spending time with the gun-spangled man himself and his array of young female companions. When McAfee went on the lam after the murder, saying he’d be killed if he turned himself in, Wired published Davis’ profile as a 47-page ebook, John McAfee’s Last Stand. It paints a picture of a fascinating paranoiac whose fear brought him to the top of the anti-virus industry and to the bottom of a hole dug in the sand where he hid, covered by a piece of cardboard, while officials searched for him after the death of Gregory Faull. It’s an engaging read, even now that further chapters, including an escape to Guatemala, an accidental disclosure of his location by Vice magazine, and expulsion to Florida, have been added to McAfee’s story.

Continue reading “Fear and More Fear in Central America: An Ebook Look at John McAfee”


WhenIm164coverWhen I'm 164, by David Ewing Duncan, Published by TED Books (Available for Kindle, iPad, Nook)

Reviewed by Annalee Newitz

Half cultural prognostication and half science journalism, David Ewing Duncan's TED Books longread When I'm 64 explores whether medicine will one day make it possible for us to live forever — and what would happen to human society if we did. It's a hotly debated topic, and Duncan takes his time tackling every aspect of it in this lengthy essay. Engaging and often fun, the book takes us from the labs where scientists are exploring the genes that control aging, to brain-computer interface demonstrations where paralyzed people are learning to control artificial limbs with their minds. Whether we do it with biology or machines, it's likely that humans will artificially enhance our longevity at some point. Though the prospect of doubling our life expectancy seems crazy to some, Duncan argues it's not entirely implausible. Especially given how far we've come over the past century. 

Still, ethical questions plague the project. While researching his book, Duncan ran a survey online and in his lectures where he asked people if they would like to live beyond the standard 80 years. Most said no, though a significant minority said they wouldn't mind living to be 120 or 164. Those yearning to be immortal represented less than one percent of respondents. Many people felt that living longer than 80 years would mean depleting the Earth's resources even more quickly than we already are. Others worried that young people would have no chance at getting good jobs, since their elders could keep working for decades longer. Some simply felt that living for a long time would be depressing and boring.

Several sections of the book are devoted to Duncan's quest to understand how it would change humanity if we could live much longer than we do now. From the rational world of tissue engineering labs where researchers hope to use 3D printers to make healthy, new organs, he ventures into Singularity University where would-be immortals from Silicon Valley listen eagerly to longevity advocate Aubrey De Gray's prediction that the first person who will live to be 1,000 has already been born. These true believers imagine that science will solve our energy problems and economic difficulties long before overpopulation due to immortality becomes a planet-destroying problem.

As if acknowledging the mostly unscientific nature of the longevity project, Duncan explores its implications by discussing mythology and science fiction about immortality. We may not know what role telomeres play in aging, but we certainly know that The Matrix and Terminator warn against using technology to enhance humans. Given the speculative nature of his topic, Duncan's forays into fiction make a lot of sense, and help provide a cultural frame for debates over longevity enhancement.

Here on Download the Universe, we often discuss how a particular e-book makes use of the medium, whether with enhanced images, video, or even just a good set of links out to more sources. But with When I'm 164, I'd like to talk about a stylistic quirk of e-books that has nothing to do with format: the fact that it's become standard practice for online writing to include a lot of first-person, confessional storytelling. 

Should online writing always be personal? Certainly it's refreshing that online writers try to avoid some of the print media's fake objectivity. But should that always mean authors need to personalize their subjects?

Like a lot of longreads online, Duncan's book veers into the personal. He delves into his sadness at his parents' impending deaths, interviews both them and one of his sons about their views on life extension, and ultimately concludes the book by declaring that he's emotionally torn by the idea of living forever. In some ways, the climax of the book is Duncan's final declaration of ambivalence about scientifically enhanced longevity. I think this personal touch works in some ways — it helps to draw the reader in, and acknowledges the highly personal responses that many people have to this area of research.  

But it often reads as cheesy and unnecessary, as if Duncan were just going through the motions of making his online writing more personal than print.  Of course it's easy to sympathize with his sadness at a parent's decline, but there is nothing particularly insightful or unusual to Duncan's first-person stories about these issues. He paints the scientists and thinkers he's consulted for this book in far more interesting detail than he paints himself. The first person bits just weren't necessary to make this story compelling.

Duncan is at his best when coaxing out intriguing speculations from scientists, engineers and philosophers about their views on life extension. Duncan's observations of their work form the meat of this extremely gripping tale about one possible future — of enhanced longevity — that could arise from contemporary medical science.


Newitz12web2Annalee Newitz is the editor-in-chief of io9.com, and the author of
Scatter, Adapt and Remember: How Humans Will Survive a Mass Extinction (coming in May 2013 from Doubleday).


Hookeflea copyMicrographia: Or Some Physiological Descriptions of Minute Bodies Made With Magnifying Glasses With Observations and Inquiries Thereupon
. By Robert Hooke. Originally published 1665. Project Gutenberg (web), Linda Hall Libary (web), Google Books (free), National Library of Medicine (flash web site, Turn the Pages App [free])

Reviewed by Carl Zimmer

In January 1665, Samuel Pepys wrote in his diary that he stayed up till two in the morning reading a best-selling page-turner, a work that he called “the most ingenious book I read in my life.” It was not a rousing history of English battles or a proto-bodice ripper. It was filled with images: of fleas, of bark, of the edges of razors.

The book was called Micrographia. It provided the reading public with its first look at the world beyond the naked eye. Its author, Robert Hooke, belonged to a brilliant circle of natural philosophers who–among many other things–were the first in England to make serious use of microscopes as scientific instruments. They were great believers in looking at the natural world for themselves rather than relying on what ancient Greek scholars had claimed. Looking under a microscope at the thousands of facets on an insect’s compound eye, they saw things at the nanoscale that Aristotle could not have dreamed of. A razor’s edge became a mountain range. In the chambers of a piece of bark, Hooke saw the first evidence of cells.

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